面面的徐爷

Different Length List to Dataframe in R

故人何不返，春花复应晚。

1. Set a demo list # Your input list gene_list <- list( GeneListA = c("A", "B", "C", "D", "E", "F"), GeneListB = c("A", "F", "H"), GeneListC = c("A", "C", "D", "H"), GeneListD = NA ) p...

Posted by Chevy on June 12, 2024

Bowtei2_Hisat2_pip_to_bam_files

芳林新叶催陈叶，流水前波让后波。

PROBLEM: want to preseve the terminal output from bowtie2, but also copy the stderr from bowtie into a separate file SOLUTION: use tee along with some bash stream redirection to copy the stderr st...

Posted by Chevy on March 22, 2024

Create your R package

(Connect Rstudio to Github and push project to Github)

1. Use Rstudio to create a new project for package Reference:R Package Development > Start from a brand new environment. 2. Connecting Rstudio to Github Reference:how-to-use-git-github-with-r...

Posted by Chevy on February 21, 2024

group pvalue calculation and visualization using rstatix and ggpubr

Add color to life.

1. Get example data library(tidyverse) library(rstatix) example <- tibble::tibble( para = rnorm(n = 30, mean = 300, sd = 20) %>% round(digits = 2), dose = rep(rep(c("dose_1", "dose_2...

Posted by Chevy on February 19, 2024

ggplot2_plot_raster

一悟归身处，何山路不通。

Shwo how to ggplot2 using stat_density 使用geom_raster来画这张图 Reference: https://ggplot2.tidyverse.org/reference/geom_tile.html library(tidyverse) ## ── Attaching core tidyverse packages ─────...

Posted by Chevy on January 30, 2024

春晖の学习资源整合

秋色从西来，苍然满关中。

引言对于看到过的很棒的R语言学习网站，现予以整理，以待后览 Topic Description Link 学习网站用rmarkdown定制你的数据分析报告 - 今日使用mageck有感- 我要做R语言全栈...

Posted by Chevy on January 26, 2024

How to calculate correlation R2 and slope

不采百花，难酿好蜜。

Using rstatix do quick calculation library(tidyverse) library(rstatix) iris %>% group_by(Species) %>% cor_test(Sepal.Width, Sepal.Length, method = "pearson") ## # A tibble: 3 × 9 ## ...

Posted by Chevy on January 26, 2024

Posting Rmarkdowns to your Jekyll website

蟠木不雕饰，且将斤斧疏。

前言最近习惯使用rmarkdown来写东西，主要好处是能够兼容图片，还可以一键推送到RPubs。但是rmakrdown写完以后，遇到一个问题，以往使用markdown写的记录，可以很方便的转到Jekyll里面的post生成blog用于记录和分享，rmakrdown是不兼容的，但是保留脚本生成的图片其实还是我的刚需，所以就Jekyll和rmarkdown的联通做了一些搜索，予以记...

Posted by Chevy on January 24, 2024

Install Rstudio Server introduction

君子欲讷于言而敏于行。

本文由简悦 SimpRead 转码，原文地址 claudiu.psychlab.eu Tutorials from Claudiu’s blog Install R (r-base) 1. Install helper software software-properties-common and dirmngr software-properties-c...

Posted by Chevy on January 22, 2024

Rstatix calculate correlation R2 and slope

君子欲讷于言而敏于行。

测试在R里面，使用tidyverse搭配rstatix更简便的做计算，例如t.test()/cor() library(tidyverse) library(rstatix) iris %>% group_by(Species) %>% cor_test(Sepal.Width, Sepal.Length, method = "pearson") bdims_sum...

Posted by Chevy on November 28, 2023

Chevy Blog

Different Length List to Dataframe in R

故人何不返，春花复应晚。

Bowtei2_Hisat2_pip_to_bam_files

芳林新叶催陈叶，流水前波让后波。

Create your R package

(Connect Rstudio to Github and push project to Github)

group pvalue calculation and visualization using rstatix and ggpubr

Add color to life.

ggplot2_plot_raster

一悟归身处，何山路不通。

春晖の学习资源整合

秋色从西来，苍然满关中。

How to calculate correlation R2 and slope

不采百花，难酿好蜜。

Posting Rmarkdowns to your Jekyll website

蟠木不雕饰，且将斤斧疏。

Install Rstudio Server introduction

君子欲讷于言而敏于行。

Rstatix calculate correlation R2 and slope

君子欲讷于言而敏于行。

FEATURED TAGS

ABOUT ME

FRIENDS